Structure of PDB 8f29 Chain B

Receptor sequence
>8f29B (length=506) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
KAQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEE
LVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGP
GLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLK
AVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYC
VYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAA
SIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYL
HSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF
LEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVA
AFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNG
HLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSAT
ESFVAT
3D structure
PDB8f29 Yeast ATP synthase in conformation-1 at pH 6
ChainB
Resolution4.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP B Q174 G176 K177 T178 R364 N433 Q434 Q171 G173 K174 T175 R361 N430 Q431
BS02 MG B T178 Q210 T175 Q207
BS03 ADP B S374 R375 L394 S371 R372 L391
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0032559 adenyl ribonucleotide binding
GO:0043531 ADP binding
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Biological Process
GO:0006754 ATP biosynthetic process
GO:0015986 proton motive force-driven ATP synthesis
GO:0046034 ATP metabolic process
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005758 mitochondrial intermembrane space
GO:0005829 cytosol
GO:0016020 membrane
GO:0042645 mitochondrial nucleoid
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
GO:0045267 proton-transporting ATP synthase, catalytic core

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8f29, PDBe:8f29, PDBj:8f29
PDBsum8f29
PubMed38316880
UniProtP07251|ATPA_YEAST ATP synthase subunit alpha, mitochondrial (Gene Name=ATP1)

[Back to BioLiP]