Structure of PDB 8ezi Chain B

Receptor sequence
>8eziB (length=416) Species: 220668 (Lactiplantibacillus plantarum WCFS1) [Search protein sequence]
SVAIDLPYDKRTITAQIDDENYAGKLVSQAATYHNKLSEQETVEKSLDNP
IGSDKLEELARGKHNIVIISSDHTRPVPSHIITPILLRRLRSVAPDAAIA
ILVATGFHRPSTHEELVNKYGEDIVNNEEIVMHVSTDDSSMVKIGQLPSG
GDCIINKVAAEADLLISEGFIESHFFAGFSGGRKSVLPGIASYKTIMANH
SGEFARTGNLMHNSIHKDMVYAARTAKLAFIINVVLDEDKKIIGSFAGDM
EAAHKVGCDFVKELSSVPAIDCDIAISTNGGYPLDQNIYQAVKGMTAAEA
TNKEGGTIIMVAGARDGHGGEGFYHNLADVDDPKEFLDQIPDQWTAQIFA
RILVHHHVIFVSDLVDPDLITNMHMELAKTLDEAMEKAYAREGQAAKVTV
IPDGLGVIVKASWSHP
3D structure
PDB8ezi Irreversible Inactivation of Lactate Racemase by Sodium Borohydride Reveals Reactivity of the Nickel-Pincer Nucleotide Cofactor
ChainB
Resolution1.99 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.1.2.1: lactate racemase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SO3 B R75 H108 Y294 Q295 K298 R75 H108 Y289 Q290 K293
BS02 4EY B S71 D72 R75 A104 F107 H108 H174 F176 S180 G181 K184 P188 H200 S71 D72 R75 A104 F107 H108 H174 F176 S180 G181 K184 P188 H200
BS03 CA B D396 E400 D382 E386
BS04 MG B D380 D382 D366 D368
Gene Ontology
Molecular Function
GO:0016853 isomerase activity
GO:0046872 metal ion binding
GO:0050043 lactate racemase activity

View graph for
Molecular Function
External links
PDB RCSB:8ezi, PDBe:8ezi, PDBj:8ezi
PDBsum8ezi
PubMed37886035
UniProtF9USS9|LARA_LACPL Lactate racemase (Gene Name=larA)

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