Structure of PDB 8efy Chain B

Receptor sequence
>8efyB (length=310) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGK
TTLAHVIAHELGVNLRVTSGPAIPGDLAAILANSLEEGDILFIDEIHRLS
RQAEEHLYPAMEDFVMDIVIGARTIRLELPRFTLIGATTRPGLITAPLLS
RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVA
KRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLI
LRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATEL
AYRHLGYPPP
3D structure
PDB8efy Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate
ChainB
Resolution3.16 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B R104 R147 R101 R140
BS02 dna B P77 V265 P299 R300 G301 P74 V258 P292 R293 G294
BS03 AGS B P8 Y14 I15 G50 K51 T52 T53 M204 R205 P7 Y13 I14 G49 K50 T51 T52 M197 R198
Gene Ontology
Molecular Function
GO:0000400 four-way junction DNA binding
GO:0003677 DNA binding
GO:0005524 ATP binding
GO:0009378 four-way junction helicase activity
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0032508 DNA duplex unwinding
Cellular Component
GO:0005737 cytoplasm
GO:0048476 Holliday junction resolvase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8efy, PDBe:8efy, PDBj:8efy
PDBsum8efy
PubMed
UniProtQ5SL87|RUVB_THET8 Holliday junction branch migration complex subunit RuvB (Gene Name=ruvB)

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