Structure of PDB 8eef Chain B

Receptor sequence
>8eefB (length=436) Species: 1697 (Corynebacterium ammoniagenes) [Search protein sequence]
KVVIIGAGFAGLVAARELQTAGIEYEILEAKDRIGGRAWTEERMGRPLEL
GATWVHWFQAHTWTEIMRYGQRTEITASPSGNDAHWVTDGKVVKGTEDDL
DEKLTAAMGVTYEGSEEYFPNPHDPLWVLSDDFDGPAEVRERFLSDDQTN
AIDLVKEAGFDQETIDLVDAFWCAGYIGDPYTGSALMAKQWGALSDNRYR
VMEDITLKWKLNNGMRSLYDGIAGDLNTDIRLNTPVAKVEHGATVTTESG
EVIEASAVICTVPVGALSNIEFSPALPDAVQSVIDDKWNSQGAKIWIKIK
GHHRFLGYAPKPAKMSVVRSEYFMDDDTTILVGFGYDNTNIDLNSIEDAQ
AVINQWRDDLEVVDTTGHNWVADKWAGQAWGTLRKGQFTQGWSLFDIDSQ
LFFAGSDYAYGWRGVCVDGALEKGMTTARQVINSMR
3D structure
PDB8eef Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase.
ChainB
Resolution2.21 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 OTR B F175 A178 T210 L211 W387 F171 A174 T206 L207 W380
BS02 FAD B I9 G10 G12 A14 E33 A34 G40 R41 G55 A56 T57 W58 V59 P239 V240 T268 V269 W382 W387 S414 V423 C424 V425 I5 G6 G8 A10 E29 A30 G36 R37 G51 A52 T53 W54 V55 P235 V236 T261 V262 W375 W380 S406 V415 C416 V417
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Feb 17 13:20:43 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8eef', asym_id = 'B', title = 'Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8eef', asym_id='B', title='Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0016491', uniprot = '', pdbid = '8eef', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491', uniprot='', pdbid='8eef', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>