Structure of PDB 8dk7 Chain B

Receptor sequence

>8dk7B (length=223) Species: 9606 (Homo sapiens) [Search protein sequence]

EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVAS
ISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQG
YRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVNHKPSNTKVDKKVEPK

3D structure

PDB

8dk7 Discovery of small molecules that target a tertiary-structured RNA.

Chain

Resolution

2.46 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B	Y34 P56 Y57 S58 S60 Q102 Y104 R105 R110	Y31 P53 Y54 S55 S57 Q99 Y101 R102 R107

External links

PDB	RCSB:8dk7, PDBe:8dk7, PDBj:8dk7
PDBsum	8dk7
PubMed	36413497

[Back to BioLiP]