Structure of PDB 8dco Chain B

Receptor sequence
>8dcoB (length=181) Species: 197 (Campylobacter jejuni) [Search protein sequence]
MAIKFNIKESKILNGVYIITPNKFSDLRGDIWTAFTDEYLSNLVPNGIKF
KHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKW
EKFIISPRNQQLILLPPNMGNSHYVSSKEAVYYYKLAYKGEYLDAPDQFT
YAWNDKRIAIDWPTNSPILSERDILAMNKDK
3D structure
PDB8dco C3- and C3/C5-Epimerases Required for the Biosynthesis of the Capsular Polysaccharides from Campylobacter jejuni .
ChainB
Resolution1.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 5.1.3.13: dTDP-4-dehydrorhamnose 3,5-epimerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GDP B I3 N22 F24 R28 I31 T33 I3 N22 F24 R28 I31 T33
BS02 GDP B K54 R64 H67 D144 R172 K54 R64 H67 D144 R172
Gene Ontology
Molecular Function
GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity
GO:0016854 racemase and epimerase activity
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8dco, PDBe:8dco, PDBj:8dco
PDBsum8dco
PubMed36093987
UniProtF2X7E5

[Back to BioLiP]