Structure of PDB 8db9 Chain B

Receptor sequence
>8db9B (length=304) Species: 5722 (Trichomonas vaginalis) [Search protein sequence]
MKLWIDTDCGIDDATAILICLANPSIEIVGISCIGGNASLQNVIRNVNRT
LKVWGKTDIPIFGGCQAPLVQPKMEIPHIHGGDGLGDINDNDFGTNTPNK
LEKEHAVNALIHAANTIEDLNILCLAPLTNIAIALSMAPEAILKIKHFYI
MGGAENGKGNITPYGEFNWRADPEAAQIVLQTYPQYQTTIASWTLAVFNS
FNANDYDFFNLDGNLVRRFIRETWKPIIAFDGGRICPADPLAAFIAVYGD
RAIKRAERLHLSMVLEGEKLGMSLAEPDEKGCLVVKECDAELFVKILREL
QDHQ
3D structure
PDB8db9 Structure-Guided Insight into the Specificity and Mechanism of a Parasitic Nucleoside Hydrolase.
ChainB
Resolution2.89 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 R1Y B D12 N37 M151 N160 E166 F167 N168 W193 F230 D231 A238 D239 D12 N37 M151 N160 E166 F167 N168 W193 F230 D231 A238 D239
BS02 CA B D8 D13 N37 L125 D239 D8 D13 N37 L125 D239
Gene Ontology
Molecular Function
GO:0008477 purine nucleosidase activity
GO:0016787 hydrolase activity
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0046872 metal ion binding
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006152 purine nucleoside catabolic process
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8db9, PDBe:8db9, PDBj:8db9
PDBsum8db9
PubMed35994320
UniProtA2EYV3

[Back to BioLiP]