Structure of PDB 8db5 Chain B

Receptor sequence
>8db5B (length=178) Species: 197 (Campylobacter jejuni) [Search protein sequence]
HMEIKFNIEESKILNGVYIITPNKFSDLRGDIWTAFTDEYLSNLVPNGIK
FKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLK
WEKFIISPRNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYLDAPDQF
TYAWNDERIAIDWPTNSPILSERDILAM
3D structure
PDB8db5 C3- and C3/C5-Epimerases Required for the Biosynthesis of the Capsular Polysaccharides from Campylobacter jejuni .
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.1.3.13: dTDP-4-dehydrorhamnose 3,5-epimerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GDP B K54 R64 H67 D144 R172 K55 R65 H68 D145 R173
BS02 GDP B H0 M1 N22 F24 R28 I31 T33 H1 M2 N23 F25 R29 I32 T34
Gene Ontology
Molecular Function
GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity
GO:0016853 isomerase activity
GO:0016854 racemase and epimerase activity
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8db5, PDBe:8db5, PDBj:8db5
PDBsum8db5
PubMed36093987
UniProtA0A0S2CFK0

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