Structure of PDB 8d9g Chain B

Receptor sequence
>8d9gB (length=1286) Species: 237368 (Candidatus Scalindua brodae) [Search protein sequence]
MNITVELTFFEPYRLVEWFDWDARKKSHSAMRGQAFAQWTWKGKGRTAGK
SFITGTLVRSAVIKAVEELLSLNNGKWEGVPCCNGSFQTDESKGKKPSFL
RKRHTLQWQANNKNICDKEEACPFCILLGRFDNAGKVHERNKDYDIHFSN
FDLDHKQEKNDLRLVDIASGRILNRVDFDTGKAKDYFRTWEADYETYGTY
TGRITLRNEHAKKLLLASLGFVDKLCGALCRIEVIKDHNDELRKQAEVIV
EAFKQNDKLEKIRILADAIRTLRLHGEGVIEKDELPDGKEERDKGHHLWD
IKVQGTALRTKLKELWQSNKDIGWRKFTEMLGSNLYLIYKKETGGVSTRF
RILGDTEYYSKAHDSEGSDLFIPVTPPEGIETKEWIIVGRLKAATPFYFG
VQQPSDSIPGKEKKSEDSLVINEHTSFNILLDKENRYRIPRSALRGALRR
DLRTAFGSGCNVSLGGQILCNCKVCIEMRRITLKDSVSDFSEPPEIRYRI
AKNPGTATVEDGSLFDIEVGPEGLTFPFVLRYRGHKFPEQLSSVIRYWEE
NDGKNGMAWLGGLDSTGKGRFALKDIKIFEWDLNQKINEYIKERGMRGKE
KELLEMGESSLPDGLIPYKFFEERECLFPYKENLKPQWSEVQYTIEVGSP
LLTADTISALTEPGNRDAIAYKKRVYNDGNNAIEPEPRFAVKSETHRGIF
RTAVGRRTGDLGKEDHEDCTCDMCIIFGNEHESSKIRFEDLELINGNEFE
KLEKHIDHVAIDRFTGGALDKAKFDTYPLAGSPKKPLKLKGRFWIKKGFS
GDHKLLITTALSDIRDGLYPLGSKGGVGYGWVAGISIDDNVPDDFKEMIN
KTNNDYVHPGHQSPKQDHKNKNIYYPHYFLDSGSKVYREKDIITHEEFTE
ELLSGKINCKLETLTPLIIPDTSDENGLKLQGNKPGHKNYKFFNINGELM
IPGSELRGMLRTHFEALTKSCFAIFGEDSTLSWASKTLGGKLDKALHPCT
GLSDGLCPGCHLFGTTDYKGRVKFGFAKYENGPEWLITRGNNPERSLTLG
VLESPRPAFSIPDDESEIPGRKFYLHHNGWRIIRQKQLEIRETVQPERNV
TTEVMDKGNVFSFDVRFENLREWELGLLLQSLDPGKNIAHKLGKGKPYGF
GSVKIKIDSLHTFKINSNNDKIKRVPQSDIREYINKGYQKLIEWSGNNSI
QKGNVLPQWHVIPHIDKLYKLLWVPFLNDSKLEPDVRYPVLNEESKGYIE
GSDYTYKKLGDKDNLPYKTRVKGLTTPWSPWNPFQV
3D structure
PDB8d9g Craspase is a CRISPR RNA-guided, RNA-activated protease.
ChainB
Resolution2.57 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B E11 W18 R32 T40 K42 K50 F52 G55 T56 L57 R59 S86 F87 Q88 T89 K96 P97 S98 F99 L100 R101 K102 R103 L128 R130 G135 K136 H138 Y144 H147 F148 N150 D152 I172 L173 N174 R175 V176 G181 K182 A183 Y186 F187 Y384 D395 G426 R467 S468 R471 R475 R476 V488 L490 G491 L495 T508 L509 Y524 R525 I526 K528 F541 G588 L589 S591 T679 A680 T721 R723 I725 R727 T728 N755 S759 S760 H784 V785 A786 I787 R789 K799 F800 S849 Y917 P962 S996 E997 R999 G1000 R1003 I1016 G1416 T1417 T1418 K1421 L1454 E1455 S1456 R1458 A1460 F1461 Y1476 G1545 K1546 G1547 K1548 P1549 Y1640 L1643 Y1658 E11 W18 R32 T40 K42 K50 F52 G55 T56 L57 R59 S86 F87 Q88 T89 K96 P97 S98 F99 L100 R101 K102 R103 L128 R130 G135 K136 H138 Y144 H147 F148 N150 D152 I172 L173 N174 R175 V176 G181 K182 A183 Y186 F187 Y358 D369 G400 R441 S442 R445 R449 R450 V462 L464 G465 L469 T482 L483 Y498 R499 I500 K502 F515 G562 L563 S565 T653 A654 T695 R697 I699 R701 T702 N729 S733 S734 H758 V759 A760 I761 R763 K773 F774 S823 Y875 P920 S954 E955 R957 G958 R961 I974 G1014 T1015 T1016 K1019 L1052 E1053 S1054 R1056 A1058 F1059 Y1074 G1143 K1144 G1145 K1146 P1147 Y1238 L1241 Y1256
BS02 rna B K182 K184 K287 R289 R318 H323 Y362 K366 R377 D537 G538 L540 E743 H757 D796 K797 K799 F800 T1418 L1454 E1455 S1456 R1500 K182 K184 K261 R263 R292 H297 Y336 K340 R351 D511 G512 L514 E717 H731 D770 K771 K773 F774 T1016 L1052 E1053 S1054 R1098
BS03 ZN B C83 C116 C122 C83 C116 C122
BS04 ZN B C496 C498 C501 C470 C472 C475
BS05 ZN B H742 C745 H716 C719
BS06 ZN B C1401 C1409 C1412 C999 C1007 C1010
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