Structure of PDB 8d8l Chain B

Receptor sequence

>8d8lB (length=266) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

PYPNLIPSANDKPYSSQELFLRQLNHSMRTAKLGATISKVYYPHKDIFYP
PLPENITVESLMSAGVHLGQSTSLWRSSTQSYIYGEYKGIHIIDLNQTLS
YLKRAAKVVEGVSESGGIILFLGTRQGQKRGLEEAAKKTHGYYVSTRWIP
GTLTNSTEISGIWEKQEIDSNDNPTERALSPNETSKQVKPDLLVVLNPTE
NRNALLEAIKSRVPTIAIIDTDSEPSLVTYPIPGNDDSLRSVNFLLGVLA
RAGQRGLQNRLARNNE

3D structure

PDB

8d8l Principles of mitoribosomal small subunit assembly in eukaryotes.

Chain

Resolution

2.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B	Q150 H153 H171 K172 F175 Y176 P177 S200 W202 S204 E261 K264 K265 R274 I276 P277 G278 T281 N282 E285 N330 E334 K337 R378	Q23 H26 H44 K45 F48 Y49 P50 S73 W75 S77 E134 K137 K138 R147 I149 P150 G151 T154 N155 E158 N203 E207 K210 R251
BS02	MG	B	Q197 D347 D363 D364	Q70 D220 D236 D237

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation
GO:0032543	mitochondrial translation

	Cellular Component
GO:0005739	mitochondrion
GO:0005743	mitochondrial inner membrane
GO:0005763	mitochondrial small ribosomal subunit
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8d8l, PDBe:8d8l, PDBj:8d8l
PDBsum	8d8l
PubMed	36482135
UniProt	P32902\|RT04_YEAST Small ribosomal subunit protein uS2m (Gene Name=MRP4)

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