Structure of PDB 8d5q Chain B

Receptor sequence

>8d5qB (length=244) Species: 10090 (Mus musculus) [Search protein sequence]

MTLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTL
RSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTCSAGRGGY
AEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF
YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATF
WQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD

3D structure

PDB

8d5q Peptide Centric V beta Specific Germline Contacts Shape a Specialist T Cell Response.

Chain

Resolution

2.501 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	A94 G95 R96 G97 G98 Y99 A100	A95 G96 R97 G98 G99 Y100 A101

External links

PDB	RCSB:8d5q, PDBe:8d5q, PDBj:8d5q
PDBsum	8d5q
PubMed	35967379

[Back to BioLiP]