Structure of PDB 8d47 Chain B

Receptor sequence

>8d47B (length=231) Species: 9606 (Homo sapiens) [Search protein sequence]

EVQLVESGGGVVQPGGSLRLSCAASGFNFNNYALHWVRQAPGKGLEWVAI
ISYEARNKKYGVSVMGRFSISRDNSKSIMYLEMNSLRVEDTGVYYCARDL
FLSDYDRSGYDPTRGGFDHWGQGTLVTVSSASTKGPSVFPLAPSSKTSGG
TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
PSSSLGTQTYICNVNHKPSNTKVDKRVEPKS

3D structure

PDB

8d47 Human neutralizing antibodies to cold linear epitopes and subdomain 1 of the SARS-CoV-2 spike glycoprotein.

Chain

Resolution

2.0 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	N31 Y52A E53 R55 N56 K57 L98 S99 Y100A	N31 Y53 E54 R56 N57 K58 L102 S103 Y105

External links

PDB	RCSB:8d47, PDBe:8d47, PDBj:8d47
PDBsum	8d47
PubMed	36701425

[Back to BioLiP]