Structure of PDB 8cmc Chain B

Receptor sequence
>8cmcB (length=192) Species: 9606 (Homo sapiens) [Search protein sequence]
SMGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYR
AVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPK
VTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLI
QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA
3D structure
PDB8cmc Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4 + T cell immunity.
ChainB
Resolution1.42 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B F13 P56 D57 Y60 W61 R71 Y78 H81 N82 V85 F15 P58 D59 Y62 W63 R73 Y80 H83 N84 V87
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

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Biological Process
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Cellular Component
External links
PDB RCSB:8cmc, PDBe:8cmc, PDBj:8cmc
PDBsum8cmc
PubMed37471227
UniProtD7RIG0

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