Structure of PDB 8ayk Chain B

Receptor sequence

>8aykB (length=275) Species: 81468 (Aminobacterium colombiense) [Search protein sequence]

MNLCYIDGKFLPLEEAKLPVTDLIIQRGVGVFETISTHSRRPLMLTPHLK
RLEGSATASSIVMPATLDEMARIIREGIKKMGCETMVRPYITGGDSFGKD
HLFSSSRYFVIFEEIRKPDPILYEKGVALHPINAERYLPSTKSINYMLSF
TGQRDSKGAYEILYCPEGEIVEGSHSTFFLIKNGHLITAPTSRALSGTTR
QIVLELARRGNIQVEERCPLLTELPEAEEAFITGTVKELLPVVRIGDQII
GNGVPGKLTKHLHQVYLSSIVEWLE

3D structure

PDB

8ayk To the Understanding of Catalysis by D-Amino Acid Transaminases: A Case Study of the Enzyme from Aminobacterium colombiense.

Chain

Resolution

1.9 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	PW0	B	T34 R51 R136 K142 Y146 E172 H175 S176 L195 T198 T199 G234 T235 V236 K237	T34 R51 R136 K142 Y146 E172 H175 S176 L195 T198 T199 G234 T235 V236 K237
BS02	PMP	B	R51 K142 Y146 E172 S174 H175 S176 L195 T198 T199 T235	R51 K142 Y146 E172 S174 H175 S176 L195 T198 T199 T235

Gene Ontology

	Molecular Function
GO:0003824	catalytic activity
GO:0008483	transaminase activity

	Biological Process
GO:0019752	carboxylic acid metabolic process
GO:0046394	carboxylic acid biosynthetic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:8ayk, PDBe:8ayk, PDBj:8ayk
PDBsum	8ayk
PubMed	36903355
UniProt	D5EHC5

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