Structure of PDB 8axi Chain B

Receptor sequence
>8axiB (length=572) Species: 239935 (Akkermansia muciniphila) [Search protein sequence]
VPEPEVVATPPADAGRGLIRVDSREIRHYSGTRKEPDYLVSRDNGKTWEM
KAAPAGYPPNYGGIPKESPAIVRNPLTREFIRVQPIGGFVFLSRGGLDGK
WLAVTNDGKLEEDWKDPEKRKNLKKLGGIMRTPVFVNKGRRVIVPFHNMG
GGTKFHISDDGGLTWHVSRNGVTSPRHEARPPHQGVRWFNNAVEATVLEM
KDGTLWALARTSQDQAWQAFSKDYGETWSKPEPSRFFGTLTMNTLGRLDD
GTIVSLWTNTMALPENATAGNGTWEDVFTNRDSHHIAMSGDEGKTWYGFR
EIILDEHRNHPGYATLDGPEDRGKHQSEMVQLDKNRILISLGQHKNHRRL
VIVDRRWVGAKTRATQTGKDLDSQWTIHTYIPQKKGHCSYNRKPSAELVQ
DPSGGTKKVLQIKRLDDPELVNEKSNVDYRNGGATWNFPNGTTGLVKFRF
RVVDGEQADDSGLQVSLTDRLFNACDSTTKDYALFTFPIRLKPAPHLLLG
MKKVPFTPGAWHEISLLWQGGQAVVSLDGKKAGTLKMANKSPNGASYIHF
ISTGSQPDAGILLDTVNARVKL
3D structure
PDB8axi Sialidases and Fucosidases of Akkermansia muciniphila are key for rapid growth on colonic mucin and nutrient sharing amongst mucin-associated human gut microbiota
ChainB
Resolution1.25 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL B W212 W298 E299 D345 H411 W188 W274 E275 D321 H387
BS02 DAN B E91 I153 H171 W212 E218 R234 R305 E67 I129 H147 W188 E194 R210 R281
BS03 GAL B F244 K246 E256 F220 K222 E232
BS04 CA B E289 E299 D300 E265 E275 D276
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8axi, PDBe:8axi, PDBj:8axi
PDBsum8axi
PubMed37005422
UniProtB2ULI1

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