Structure of PDB 8axf Chain B

Receptor sequence

>8axfB (length=256) Species: 1980427 (Emaravirus fici) [Search protein sequence]

LKPIDVEVQAFTSASSNFTLHKYRNICHVDTCAAHLSKSKENKEKLQARN
LRLIVSSNEFLVVVKELNDSTVDNVVSFNKACAIMSAGVLKHTFDEEFDW
KLSKYVKTNNTTKVIPDVKIINRLAGQMGLSAGNPYYWMIVPGYEFLYEL
YPAEVLAYTLVRLQYRKNLNIPDSMTDADIVSSLVMKMNRIHKLEQTSFD
EALNLIGKDNVSEAYVELARDIGSTSKTKRNDEAILKFRELIASFLPALE
ADRIAS

3D structure

PDB

8axf RNA Encapsulation Mode and Evolutionary Insights from the Crystal Structure of Emaravirus Nucleoprotein.

Chain

Resolution

2.54 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B	F63 K95 K120 E121 L122 N123 S132 N134 K135 I176 R178 L179 G181 Q182 P197 F201 R217 L224 N225 P227 M230 M241 K242 N244 R245 T280 S281 K282 R285	F11 K40 K65 E66 L67 N68 S77 N79 K80 I121 R123 L124 G126 Q127 P142 F146 R162 L169 N170 P172 M175 M186 K187 N189 R190 T225 S226 K227 R230

Gene Ontology

	Cellular Component
GO:0019013	viral nucleocapsid

View graph for
Cellular Component

External links

PDB	RCSB:8axf, PDBe:8axf, PDBj:8axf
PDBsum	8axf
PubMed	37039649
UniProt	I2FFM8

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