Structure of PDB 8ai6 Chain B

Receptor sequence
>8ai6B (length=323) Species: 1423 (Bacillus subtilis) [Search protein sequence]
LYFQGHMYNKTVSINLDSRCNASCDHCCFSSSPTSTTRMEKEYIRELVTE
FAKNKTIQVISFTGGEVFLDYKFLKELMEIIKPYEKQITLISNGFWGLSK
KKVQEYFHDMNSLNVIALTISYDEYHAPFVKSSSIKNILEHSRKYPDIDI
SLNMAVTKDKMSNHILEELGDSILGVKITKFPMISVGAAKTRIKQENIHK
FYSLEDEDSLHCPGYAIVYHHDGEIYPCCSPAIFETKITLREEYNQSFER
TVEKLNSNLLLFILRKEGFKWFLNILKENNKIEEFDIPYEFSSICGVCGS
LFNSAEKINYFYPYMEKYYNENF
3D structure
PDB8ai6 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme.
ChainB
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 B C14 A16 C18 H20 C21 S25 G59 N87 H120 C20 A22 C24 H26 C27 S31 G65 N93 H126
BS02 SF4 B C206 P207 C222 S224 I227 F263 C289 C292 C212 P213 C228 S230 I233 F269 C295 C298
BS03 SAH B H20 C21 C22 G58 G59 I85 S115 H120 I178 H26 C27 C28 G64 G65 I91 S121 H126 I184
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:8ai6, PDBe:8ai6, PDBj:8ai6
PDBsum8ai6
PubMed38158457
UniProtQ45595|YYDG_BACSU Putative peptide biosynthesis protein YydG (Gene Name=yydG)

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