Structure of PDB 8a8o Chain B

Receptor sequence
>8a8oB (length=544) Species: 523845 (Methanothermococcus thermolithotrophicus DSM 2095) [Search protein sequence]
MDVKKIFTDILIIGGGAAGCQAAIRAKEIDKNLDVLIVEKANIIRSGCLA
AGVNAINAYLNEGETPESYVEYVKKESSGLIREDLTYTIGKRLNKMAKKL
EEYGLPIQKDGKRSIKINGESIKPILAEATLKAGVKVLNNTIATNYILKD
ETVCGAYAFSIKENKFYVIMAKAVICTTGGASGIYKPNNPGAARHKMWYS
PFNTGAGFAMGLRAGAEMTTFEMRFIALRVKDVISPTGTIVSQINALGEK
YMEKYENNTTPMRLYATLIENLEGRGPCYLDTRGISDEDVQKLKEAYLSM
SPGIILKWKDEKINPKNTPIEICGSEPYIVGGHGQAGYWVDINRKTTLEG
LYAAGDVVGGSPKKYVTGCMAEGEIAVEAAIEYIKSMENDIEIDEQEIAK
EIDRVFYPLNNKKGEFSPDEIEERMQKVMDEYAGGISSYYRVNESKLLIA
RELLKAIEEDLSKIKVRNRYELMKYHEVVDRILVARAVVEHLLYRKETRW
KCYQERVDYPEIDDNWFKFINSKYNSQTNDIEIIEREYEKFNPV
3D structure
PDB8a8o How a methanogen assimilates sulfate: Structural and functional elucidation of the complete sulfate-reduction pathway.
ChainB
Resolution1.45 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD B G14 G16 A17 A18 E39 K40 S46 G47 C48 V53 N54 A55 N57 A151 T185 T186 W206 N211 G368 D369 V379 C382 G14 G16 A17 A18 E39 K40 S46 G47 C48 V53 N54 A55 N57 A143 T177 T178 W198 N203 G355 D356 V366 C369
BS02 CA B H203 E435 H195 E422
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 23:28:46 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8a8o', asym_id = 'B', title = 'How a methanogen assimilates sulfate: Structural...dation of the complete sulfate-reduction pathway.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8a8o', asym_id='B', title='How a methanogen assimilates sulfate: Structural...dation of the complete sulfate-reduction pathway.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0016491', uniprot = '', pdbid = '8a8o', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491', uniprot='', pdbid='8a8o', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>