Structure of PDB 7yxl Chain B

Receptor sequence
>7yxlB (length=305) Species: 7227 (Drosophila melanogaster) [Search protein sequence]
MSEVERALDVLLQEAEELCIGSSVVELDRIPTALEFCREFYSKNQPVVIR
KALNWPAIGKWTPKYLIEALGDRSVDVAITPNGYADGLATQNGQEYFVLP
LETKMKLSEVVRRLDDPTGAVHYIQKQNPELAADLRVSDLDFAQQSFNKP
PDAVNFWLGDERAVTSMHKDPYENVYCVISGHKDFVLIPPHQLSCVPRGI
YPTGVYKTSDSGQFYIEPLRDEEGSDQFTEWVSVDPLSPDLAKYPEYARA
KPLKVRVHAGDILYLPNYWFHHVSQSHKCIAVNFWYDLDYDSRYCYYRML
EQMTS
3D structure
PDB7yxl Conservation of the unusual dimeric JmjC fold of JMJD7 from Drosophila melanogaster to humans.
ChainB
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.14.11.-
3.1.1.4: phospholipase A2.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B H175 D177 H278 H168 D170 H271
BS02 MG B V241 D242 P246 D247 V234 D235 P239 D240
BS03 NDF B T172 H175 N181 Y183 K190 H278 V280 N290 W292 T165 H168 N174 Y176 K183 H271 V273 N283 W285
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0106155 peptidyl-lysine 3-dioxygenase activity
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:7yxl, PDBe:7yxl, PDBj:7yxl
PDBsum7yxl
PubMed35410347
UniProtQ9VU77

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