Structure of PDB 7ypm Chain B

Receptor sequence
>7ypmB (length=454) Species: 357400 (Caulobacter sp. D5) [Search protein sequence]
HDIAELKRLDLAHHLPAQADHKVIAEQGGSRIITRAEGVYIHDGEGHQIL
DGMAGLWCVNVGYGREELAKAAYDQMLELPYYNTFFKTATPPPIELAAKI
AQKMGGHLSHVFYNSSGSEANDTVFRLVRHFWKLKGEPSRTVFISRWNAY
HGSTVAGVSLGGMKHMHKQGDLPIAGVEHVMQPYQFGDGFGEDPAAFRDR
AVQAIEDKILEVGPENVAAFIGEPVQGAGGVIIPPDGYWPAVEALCRKYG
ILLVCDEVICGFGRLGQWFGHQHYGIKPDLIAMAKGLSSGYLPISAVGVA
DHIVAELREKGGDFIHGFTYSGHPTAAAVALKNIEIMEREGLVERTRDET
GPYLAQALASLNDHPLVGEVRSLGLIGAVEIVREKGTNHRFLDKEGEAGP
IVRDLCIKNGLMVRAIRDSIVCCPPLIITKAQIDELVGIIRKSLDEAEPV
LRAL
3D structure
PDB7ypm Mechanism-Guided Computational Design of omega-Transaminase by Reprograming of High-Energy-Barrier Steps.
ChainB
Resolution1.984 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP B S123 G124 S125 Y157 H158 G159 E230 D263 V265 I266 K292 S116 G117 S118 Y150 H151 G152 E223 D256 V258 I259 K285
BS02 ALA B W64 Y157 A235 W57 Y150 A228
BS03 ALA B R136 A182 R129 A175
BS04 PLP B F325 T326 F318 T319
BS05 ALA B D178 I181 D171 I174
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Cellular Component
External links
PDB RCSB:7ypm, PDBe:7ypm, PDBj:7ypm
PDBsum7ypm
PubMed36300723
UniProtA0A318BC23

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