Structure of PDB 7yo6 Chain B

Receptor sequence
>7yo6B (length=757) Species: 5353 (Lentinula edodes) [Search protein sequence]
TQWPAPLANGGKSWASAFKKAKATVTEMTVEELANITSGVIGLCSGVTGA
VTRLGIPEFCLQDGPIGPRGVHGSSQFPAGLTVAATWDRTLMYARARGMG
QEFHDQGVHLALAPVTGGPLGRTPLNGRGWEGTFADPYACGEASYLSVKG
LTDAGVATVSKHWIAYEQETSRNLYIDIDGVSQADIQLPISSNVDDLTMH
ELYMWSFAEAVRAGTNHIMCSYNRINNTHSCSNAKGLNQLLKTELNFQGG
VVSDWGGQWDSVPAAENGLDVAMPGKGFLGALGDFWGATLVELINNGTVS
EDLVRDKAVRILTGYYYLGQDTNPPPPFVYNTIGAPTLNATSGYRNVRKP
GTAELIKEIGSASVTLLKNTGSLPLKHPQRIAVLGNDATYNVLGPNACGL
ANSACDIDNLNGTLTTGGGSGSALSPYTITPLEALQKRAIEDNAEIAAVV
ANSNTTTGAEDAIAALLPDADVTFVFLNRYSEEGADAPDFSLGGDGDNLM
DLAVTYSSNVVVVIHTTGVVDIEKWADNPNVTAILVAYLPGQEAGNSLVP
VLYGDVAPSGKLPWTWGKSIDDYVPNGVVYTDAYSPQSNFTEGVFIDYRW
FDKMGITPRYEFGFGLSYTTFTYSNLIVDHGRWAKDYSSVMETAEPFAEW
DGTNSLYDVIFTVFATITNTGNLTGSEVAQLYISIPGDNQPVRQLRGFDK
IKDLPVGDSAVVTFPIRRKDVSSWSVVDQLWYVPNGDFLISVGGSSRDLP
LNTTWTP
3D structure
PDB7yo6 Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose
ChainB
Resolution2.54 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BKR B L220 I222 I224 V227 W301 F324 L325 L328 T383 S466 L174 I176 I178 V181 W255 F278 L279 L282 T337 S420
BS02 XYL B D109 L158 Y268 D300 W301 S466 E529 D63 L112 Y222 D254 W255 S420 E483
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7yo6, PDBe:7yo6, PDBj:7yo6
PDBsum7yo6
PubMed
UniProtG8GLP2

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