Structure of PDB 7ye0 Chain B

Receptor sequence

>7ye0B (length=431) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence]

PRGSHMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEA
NVPVVVVFCLTDEFLGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGE
KISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPC
WEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPKDPLFEPWHFE
PGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRV
VLEVEKAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKE
SLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYW
AKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAW
GEREVTGKIRYMSYEGCKRKFDVKLYIEKYS

3D structure

PDB

7ye0 Visualizing the DNA repair process by a photolyase at atomic resolution

Chain

Resolution

2.75 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

4.1.99.3: deoxyribodipyrimidine photo-lyase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	B	H161 N257 E301 W305 Y376 M379 W421 R429 W431 R441 Y442 M443 S444 R450 K451	H162 N226 E270 W274 Y345 M348 W390 R398 W400 R410 Y411 M412 S413 R419 K420
BS02	dna	B	Y158 W431 E433 K439 R450	Y159 W400 E402 K408 R419
BS03	FAD	B	Y252 S265 N266 S268 E301 I302 W305 K306 K372 R378 N403 D409 N414 G415	Y221 S234 N235 S237 E270 I271 W274 K275 K341 R347 N372 D378 N383 G384

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003904	deoxyribodipyrimidine photo-lyase activity
GO:0016829	lyase activity

	Biological Process
GO:0000719	photoreactive repair
GO:0006281	DNA repair

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:7ye0, PDBe:7ye0, PDBj:7ye0
PDBsum	7ye0
PubMed	38033054
UniProt	Q8PYK9

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