Structure of PDB 7u3d Chain B

Receptor sequence
>7u3dB (length=689) Species: 54571 (Streptomyces venezuelae) [Search protein sequence]
MQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRE
TDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVS
GRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTE
YHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALE
LMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFK
SAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPR
YYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLHEVDRLS
SFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVR
DLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLV
SYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLA
TLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKSEAEATLLR
FTRSMVRLRREHPVFRRRRFFHGRPVLTDIAWFTPEGEEMTSRDWQAAHA
QALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYW
RMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRP
3D structure
PDB7u3d Allosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC B W222 Y224 D342 H449 D450 W222 Y224 D342 H441 D442
BS02 GLC B W222 Y224 N534 W222 Y224 N526
BS03 AC1 B G307 E470 Y536 G307 E462 Y528
BS04 C2E B R31 E47 R49 T51 R31 E47 R49 T51
BS05 C2E B Q433 R438 R579 F580 H582 Q425 R430 R569 F570 H572
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004133 glycogen debranching enzyme activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0005980 glycogen catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:7u3d, PDBe:7u3d, PDBj:7u3d
PDBsum7u3d
PubMed36192422
UniProtA0A5P2ALW6

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