Structure of PDB 7omd Chain B

Receptor sequence
>7omdB (length=310) Species: 6136 (Renilla reniformis) [Search protein sequence]
TSKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLH
GNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYL
TAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIE
SWDEWPDIEEAIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAA
YLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLP
KLFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFLQEDAPDEMGKYIKS
FVERVLKNEQ
3D structure
PDB7omd Catalytic mechanism for Renilla-type luciferases
ChainB
Resolution1.601 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.13.12.5: Renilla-type luciferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 VK8 B L165 I166 M174 F180 F181 V185 H285 L164 I165 M173 F179 F180 V184 H284
BS02 VK8 B W156 I159 E161 A162 P220 F262 W155 I158 E160 A161 P219 F261
BS03 VK8 B D120 E144 V147 D148 I150 I223 P224 F262 H285 D119 E143 V146 D147 I149 I222 P223 F261 H284
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004301 epoxide hydrolase activity
GO:0004497 monooxygenase activity
GO:0016787 hydrolase activity
GO:0016831 carboxy-lyase activity
GO:0050248 Renilla-luciferin 2-monooxygenase activity
Biological Process
GO:0008218 bioluminescence

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Molecular Function
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Biological Process
External links
PDB RCSB:7omd, PDBe:7omd, PDBj:7omd
PDBsum7omd
PubMed
UniProtP27652|LUCI_RENRE Coelenterazine h 2-monooxygenase

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