Structure of PDB 7nox Chain B

Receptor sequence
>7noxB (length=520) Species: 411476 (Bacteroides ovatus ATCC 8483) [Search protein sequence]
DPNAQLTTAQLQTYGDLSMMEIYRNYHYAFTQQLMGCWNTTNYGGRHTLD
NNEMSRIWTSFYTQSLKNIIDAQYRTAEDAEKVNINSVLRIYRVYLMSII
TDTYGDAPFSEAGLGFLEGKFNPKYDKQEDIYNAFFLELEDAVNKIDPTK
DKVTGDLIYAGDVTKWQQLANSLRLRFAMRISSVNPTKAQTEFENALAAN
GGVITDASSDALIKYMTIAFSFGQEAYSDYRGNSLSQLLFGNDPANNPSY
LCSTFFNQLYNSGDPRTFKISRCYYDGLMSATSPDNRVDITQEMIEKGIA
FSPRDPGAYSWEPWPTGYDSDICAELAVNNPSVTATMAREVEPKLANNFL
KSDNPGVVMTSAEVKFLMAEATVKKWNVGSVSAEDLYKQGVRAAIDFLTD
NYGCTATTDAEFDAFIQDKGAFGHTDNQKLEAINTQAWILHFTNPAECWA
NVRRSGYPKLKSPAEYGFGQYLTGGTEIPVRLCYPVLESSYNKKSYNEAI
ERMGGTDNWHSLLWWDTENQ
3D structure
PDB7nox Mapping Molecular Recognition of beta 1,3-1,4-Glucans by a Surface Glycan-Binding Protein from the Human Gut Symbiont Bacteroides ovatus.
ChainB
Resolution1.43 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC B F261 Y266 F222 Y227
BS02 BGC B E60 R95 E21 R56
BS03 BGC B E60 N78 E21 N39
BS04 BGC B W77 D282 W38 D243
BS05 MG B R492 D555 E557 R453 D516 E518
BS06 AZI B T447 D448 T408 D409
BS07 AZI B T464 D465 T425 D426
BS08 AZI B N416 V417 G418 N377 V378 G379
BS09 AZI B G442 C443 T444 G403 C404 T405
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 22 19:47:34 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7nox', asym_id = 'B', title = 'Mapping Molecular Recognition of beta 1,3-1,4-Gl... from the Human Gut Symbiont Bacteroides ovatus. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7nox', asym_id='B', title='Mapping Molecular Recognition of beta 1,3-1,4-Gl... from the Human Gut Symbiont Bacteroides ovatus. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0019865', uniprot = '', pdbid = '7nox', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0019865', uniprot='', pdbid='7nox', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>