Structure of PDB 7kmq Chain B

Receptor sequence

>7kmqB (length=754) Species: 190486 (Xanthomonas citri pv. citri str. 306)

LPPVAAAEALQLWYREPANEWVEALPVGNGRLGAMVWGGIAHERLQLNED
TLYAGGPYDSTSPDALAALPQVRALIFAGRYAEAEKLADAKLLSRPLKQM
PYQPLGDLLLDFDRADGISDYRRQLDLDTAVATTTFRSGGAVHRREVFVC
AQAQCIVVRLSCDRPGGISLRVGIDSPQTGEVTAEPGGLLFSGRNGSFAG
IEGRLRFALRVLPQVSGGKLSQVRDRLRIDAADEVVLLLSAATSYQRFDA
VDGDPLALTAARLRKAAKLDFPALLRAHLADHQRLFRRVAIDLGSSEAVQ
LPTDERVQRFAEGNDPALAALYHQYGRYLLICSSRPGTQPANLQGIWNDL
MQPPWESKYTININTEMNYWPSEANALHECVEPLEAMLFDLAQTGTHTAR
AIYDAPGWVVHNNTDLWRQAGPIDGAQWSLWPMGGVWLLQQLWDRWDYGR
DRAYLSKVYPLFKGAAEFFVATLMRDPQTGAMVTNPSMSPENQHPFGAAV
CAGPSMDAQLLRDLFAQCIAMSKLLGIDAQLAQQLAALREQLPPNRIGKA
GQLQEWQQDWDMQAPEINHRHVSHLYALHPSSQINLRDTPELAAAARRSL
EIRGDNATGWGIGWRLNLWARLADGEHAYRILQLLISPERTYPNLFDAHP
PFQIDGNFGGTAGITEMLLQSWGGSVFLLPALPKAWPRGSVRGLRVRGGA
SVDLEWEGGRLQQARLHSDRGGRYQLSYAGQTLDLELGAGRTQQVGLNNN
RLVT

3D structure

• PDB: 7kmq Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
• Chain: B
• Resolution: 2.045 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CA	B	G65 D85 S368 T373 Q374	G30 D50 S333 T338 Q339

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Nov 28 13:41:28 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7kmq', asym_id = 'B', title = 'Xyloglucan processing machinery in Xanthomonas p...e transcriptional activation of virulence factors'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7kmq', asym_id='B', title='Xyloglucan processing machinery in Xanthomonas p...e transcriptional activation of virulence factors')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0004560,0005975', uniprot = '', pdbid = '7kmq', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004560,0005975', uniprot='', pdbid='7kmq', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>