Structure of PDB 7jv9 Chain B

Receptor sequence
>7jv9B (length=525) Species: 9606 (Homo sapiens) [Search protein sequence]
SMWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRA
EPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGV
EGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIV
GYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFE
MDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRK
VPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADI
NKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLR
HTDEMFWNHVSMCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFDLV
QLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDV
LCTKCRVPSYDPLKMDEVYKVILPNFLANGGDGFQMIKDELLRHDSGDQD
INVVSTYISKMKVIYPAVEGRIKFS
3D structure
PDB7jv9 Orally Bioavailable Small-Molecule CD73 Inhibitor (OP-5244) Reverses Immunosuppression through Blockade of Adenosine Production.
ChainB
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.3.35: thymidylate 5'-phosphatase.
3.1.3.5: 5'-nucleotidase.
3.1.3.89: 5'-deoxynucleotidase.
3.1.3.91: 7-methylguanosine nucleotidase.
3.1.3.99: IMP-specific 5'-nucleotidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B D36 H38 D85 D12 H14 D61
BS02 ZN B D85 N117 H220 H243 D61 N93 H196 H219
BS03 CA B N213 D237 G298 N189 D213 G274
BS04 VPG B D85 N117 H118 D121 L184 S185 H243 N390 G392 R395 F417 G447 F500 D506 D61 N93 H94 D97 L160 S161 H219 N366 G368 R371 F393 G423 F476 D482
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0002953 5'-deoxynucleotidase activity
GO:0005515 protein binding
GO:0008252 nucleotidase activity
GO:0008253 5'-nucleotidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0050340 thymidylate 5'-phosphatase activity
GO:0050483 IMP 5'-nucleotidase activity
GO:0050484 GMP 5'-nucleotidase activity
GO:0106411 XMP 5'-nucleosidase activity
Biological Process
GO:0006196 AMP catabolic process
GO:0006259 DNA metabolic process
GO:0007159 leukocyte cell-cell adhesion
GO:0009166 nucleotide catabolic process
GO:0033198 response to ATP
GO:0046032 ADP catabolic process
GO:0046034 ATP metabolic process
GO:0046086 adenosine biosynthetic process
GO:0050728 negative regulation of inflammatory response
GO:0055074 calcium ion homeostasis
GO:0140928 inhibition of non-skeletal tissue mineralization
Cellular Component
GO:0005654 nucleoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0009897 external side of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0070062 extracellular exosome
GO:0098552 side of membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7jv9, PDBe:7jv9, PDBj:7jv9
PDBsum7jv9
PubMed32865411
UniProtP21589|5NTD_HUMAN 5'-nucleotidase (Gene Name=NT5E)

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