Structure of PDB 7jqq Chain B

Receptor sequence
>7jqqB (length=327) Species: 10756 (Salasvirus phi29) [Search protein sequence]
SLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVR
RYKPELAKVSNYFNDVAQEFPDHELVVKGRRFYIDGKLAGWAIPLSVWQS
EKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRC
ICLSNAVSVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKT
RFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFSIVYNGFTLGV
WVDVNQGLMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLA
SAFMNGYLRFDNQVIRNIAYELFRKMR
3D structure
PDB7jqq A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA.
ChainB
Resolution4.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B K11 S14 Y15 D16 Y37 R41 Y45 R150 D237 K239 P270 T272 K8 S11 Y12 D13 Y34 R38 Y42 R147 D234 K236 P267 T269
BS02 dna B K56 S99 N126 K53 S96 N123
BS03 dna B L59 S127 N128 L56 S124 N125
BS04 AGS B F6 A25 R26 G27 I28 G29 S31 Y32 E72 L156 F3 A22 R23 G24 I25 G26 S28 Y29 E69 L153
BS05 MG B S31 D118 S28 D115
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0019073 viral DNA genome packaging

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Molecular Function
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Biological Process
External links
PDB RCSB:7jqq, PDBe:7jqq, PDBj:7jqq
PDBsum7jqq
PubMed33962953
UniProtP11014|PKG16_BPPH2 DNA packaging protein (Gene Name=16)

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