Structure of PDB 7eii Chain B

Receptor sequence

>7eiiB (length=584) Species: 32630 (synthetic construct)

NKNTPLNSGKHPDLKIEVAIIGAGTSGLYTAYRLVTDKKFKAHDVQIFDM
NNKLGGRLESVIMPGMNFWGELGGMRYLTSQQIVTTLIEGYPLSEKDPNK
RTPVLKDKMTPVPFPMGDPSKLLMYLRKERFKQNAWNEAQKKGEKLPTRY
YLNENDLGFSSDQLFNKIIYDVLMADPWVAETYGSKIIKGSSVYDYSFKL
TSRDWDDIKPKLVYNFPNSPYDQRKVNDIGFWNLIKDQVSQEGYEFLANA
GGYYSNTINWNSAEAFPYMVGSAGTIYKTIEEGYDSIAYAVANSYMEHEG
ACIWSENKLLTFTKDHPLTNTHKYELTFLNLKTNTQWKVYANSIVLAMPR
KSLELLDQNNFFFNINKNSVLNNNIRSVIMEPAFAILMGFEYPWWKELGI
DSGHSITDLPMRQCYYFGTDPETNNSMLLGSYGDMETETFWKALSDDKVL
FEVKAAKSASLRELHQLDDVQATKLMVGELMNQLRELHGDTVTIPEPYVT
YFKDWTDEPFGAGYHAWKAGFSVENVMPYMRKPLTDEQIHICGEAYSDQQ
GWVEGAFCEAEKMLQEYFGLDRPYWLSPDYYLGW

3D structure

• PDB: 7eii Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining.
• Chain: B
• Resolution: 2.4 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	LYS	B	R76 Y268 E383 Y516 G553 W554	R76 Y268 E381 Y514 G551 W552
BS02	FAD	B	I21 G22 T25 S26 D49 M50 G56 R57 G73 G74 M75 R76 Y286 K310 L311 M350 S354 Y434 W507 P511 F512 G515 Y516 G545 E546 G553 W554 V555 A558	I21 G22 T25 S26 D49 M50 G56 R57 G73 G74 M75 R76 Y284 K308 L309 M348 S352 Y432 W505 P509 F510 G513 Y514 G543 E544 G551 W552 V553 A556

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Nov 26 15:39:01 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7eii', asym_id = 'B', title = 'Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7eii', asym_id='B', title='Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016491', uniprot = '', pdbid = '7eii', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491', uniprot='', pdbid='7eii', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>