Structure of PDB 7edb Chain B

Receptor sequence
>7edbB (length=347) Species: 10679 (Peduovirus P2) [Search protein sequence]
MKVLVNHEQAYNVIINAINDAKKLTDYKTNNQWVSIQNVILGTHLTYRYI
LITGLLAKATDPRVNPLALQANAPVDGAYDARSLCHSVIVGKVEGPFLEG
KLGASNEPFLNKPARYMLHSSDNPVRRGNDKVLQQLSIDILHAATTQTLA
YEMLVIALYFTLQRTNRVITPNSINFDFHKIIYNIISHPCDGETCAIAAA
ISLHLLGEQRGWIIKAHPVNQAGSKEILDIDVYHDDIVFLSIEVKDKPFN
YQDVNHAVSKASASGISKVIFLKGPRATNLDIDESLAIENAATKGVSLSF
SDVMTFTTTCYALSPLLSNDRIIDFINNTLKDIRAKDSTIEYIQSIF
3D structure
PDB7edb Structural analysis of EcoT38I restriction endonuclease
ChainB
Resolution2.39 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B K2 H7 E8 Q70 A71 N72 D80 R82 L110 R115 R126 R127 K2 H7 E8 Q70 A71 N72 D80 R82 L110 R115 R126 R127
BS02 dna B H44 L45 T46 S105 E107 L110 N111 K112 P113 P124 R126 H44 L45 T46 S105 E107 L110 N111 K112 P113 P124 R126
BS03 CA B N172 S173 N175 N172 S173 N175
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7edb, PDBe:7edb, PDBj:7edb
PDBsum7edb
PubMed
UniProtQ83VS8

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