Structure of PDB 7dne Chain B

Receptor sequence

>7dneB (length=154) Species: 32630 (synthetic construct) [Search protein sequence]

DLGKKLLEAARAGQDDEVRILLANGADVNTADETGFTPLHLAAWEGHLGI
VEVLLKNGADVNANDERGHTPLHLAAYTGHLEIVEVLLKNGAGVNATDVI
GTAPLHLAAMWGHLEIVEVLLKNGADVNIQDKFGKTAFDISIDNGNEDLA
EILQ

3D structure

PDB

7dne Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.

Chain

Resolution

1.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	R23 F48 L53 W56 R79 H81 Y89 D110 I112 T114 M122 D143 F145	R11 F36 L41 W44 R67 H69 Y77 D98 I100 T102 M110 D131 F133

External links

PDB	RCSB:7dne, PDBe:7dne, PDBj:7dne
PDBsum	7dne
PubMed	34795280

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