Structure of PDB 7dkg Chain B

Receptor sequence
>7dkgB (length=409) Species: 100837 (Influenza A virus (A/Chicken/Hong Kong/786/97 (H5N1))) [Search protein sequence]
NATEIRASVGRMVGGIGRFYIQMCTELKLSDQEGRLIQNSITIERMVLSA
FDERRNAGKDPKKTGGPIYRRRDGKWVRELILYDKEEIRRIWRQANNGED
ATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGA
AGAAIKGVGTMVMELIRMIKRGINRNFWRTRIAYERMCNILKGKFQTAAQ
KAMMDQVRESRNPGNAEIEDLIFLARSALILRGSIAHKSCLPACVYGLAV
ASGYDFEREGYSLVGIDPFRLLQNSQVFSLIRPNENPAHKSQLVWMACHS
AAFEDLRVSSFIRGTRVIPRGQLSTRGVQIASNENVEAMDSSTLELRSRY
WAIRTSDMRTEIIRMMESARPQGRGVFELSDEKATNPIVPSFDMSNEGSY
FFGDNAEEY
3D structure
PDB7dkg Crystal structures of influenza nucleoprotein complexed with nucleic acid provide insights into the mechanism of RNA interaction.
ChainB
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B R65 S69 R75 K87 T92 G93 G94 L108 L110 S367 R45 S49 R55 K59 T64 G65 G66 L80 L82 S332
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075732 viral penetration into host nucleus
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7dkg, PDBe:7dkg, PDBj:7dkg
PDBsum7dkg
PubMed33784403
UniProtQ9PX50

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