Structure of PDB 7d1u Chain B

Receptor sequence
>7d1uB (length=504) Species: 32053 (Thermostichus vulcanus) [Search protein sequence]
GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPV
LNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHI
VLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCF
GFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAH
HIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFV
VAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEA
WSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEG
EELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF
YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWF
TFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGD
VTTR
3D structure
PDB7d1u High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams.
ChainB
Resolution2.08 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA B W185 G186 P187 F190 W184 G185 P186 F189
BS02 CLA B G189 F190 G197 H201 A204 A205 V208 F247 F250 G188 F189 G196 H200 A203 A204 V207 F246 F249
BS03 CLA B R68 L69 L149 C150 F153 M166 H201 H202 F247 A248 V252 T262 R67 L68 L148 C149 F152 M165 H200 H201 F246 A247 V251 T261
BS04 CLA B W33 F61 F65 A248 A249 V252 F451 H455 F458 F462 W32 F60 F64 A247 A248 V251 F450 H454 F457 F461
BS05 CLA B T27 V30 A31 W33 A34 V62 F65 M66 H100 L103 L143 A205 T26 V29 A30 W32 A33 V61 F64 M65 H99 L102 L142 A204
BS06 CLA B V71 F90 W91 A99 H100 L149 F153 H157 F162 G163 P164 V70 F89 W90 A98 H99 L148 F152 H156 F161 G162 P163
BS07 CLA B W33 M37 Y40 G59 F61 L324 T327 G328 W450 F451 W32 M36 Y39 G58 F60 L323 T326 G327 W449 F450
BS08 CLA B S239 S240 A243 F246 F463 H466 I467 T473 L474 S238 S239 A242 F245 F462 H465 I466 T472 L473
BS09 CLA B F139 A212 F215 H216 R220 P221 P222 L229 F138 A211 F214 H215 R219 P220 P221 L228
BS10 CLA B L135 M138 F139 H142 L143 A146 M231 V237 S240 S241 A244 L134 M137 F138 H141 L142 A145 M230 V236 S239 S240 A243
BS11 CLA B W5 Y6 R7 V8 H9 T10 L238 I242 F462 G465 W468 H469 R472 W4 Y5 R6 V7 H8 T9 L237 I241 F461 G464 W467 H468 R471
BS12 CLA B H9 L12 L19 H23 H26 T27 I234 V237 L238 S241 V245 H8 L11 L18 H22 H25 T26 I233 V236 L237 S240 V244
BS13 CLA B H9 H26 V30 W33 F462 H8 H25 V29 W32 F461
BS14 CLA B V8 H9 M25 L29 W115 V7 H8 M24 L28 W114
BS15 CLA B I20 H23 L24 L133 M138 H142 L145 I19 H22 L23 L132 M137 H141 L144
BS16 CLA B I20 L24 A110 W113 H114 I19 L23 A109 W112 H113
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7d1u, PDBe:7d1u, PDBj:7d1u
PDBsum7d1u
PubMed33753866
UniProtD0VWR1|PSBB_THEVL Photosystem II CP47 reaction center protein (Fragment) (Gene Name=psbB)

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