Structure of PDB 7c8q Chain B

Receptor sequence
>7c8qB (length=321) [Search protein sequence]
KKKVALITTGGAIASRKTESGRLAAGAISGPELAEMCSLPEDVQIDVYPA
FQLPSMHITFQHLLELKQTVERVFQDGSYDGVVVTHGTDTLEETAYFLDL
TLQDERPVVVTGSQRAPEQQGTDAYTNIRHAVYTACSPDIKGAGTVVVFN
ERIFNARYVKKVHASNLQGFDVFGFGYLGIIDNDKVYVYQKPLKRDVHQL
QRPLPEVDIVKCYLDGDGKFIRAAVREGAAGIVLEGVGRGQVPPNMVGDI
EQALHQGVYIVITTSAEEGEVYTTYDYAGSSYDLAKKGVILGKDYDSKKA
RMKLAVLLASYEEGIKDKFCY
3D structure
PDB7c8q Structures of l-asparaginase from Bacillus licheniformis Reveal an Essential Residue for its Substrate Stereoselectivity.
ChainB
Resolution1.89 Å
3D
structure
Catalytic site residues are labeled in the structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 DSG B Y276 Y278 Y275 Y277
BS02 DSG B A13 S56 G88 T89 D90 A12 S55 G87 T88 D89
BS03 MG B N246 D250 N245 D249
BS04 MG B E268 D295 E267 D294
BS05 MG B E207 E228 E206 E227
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sun Dec 1 12:34:05 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7c8q', asym_id = 'B', title = 'Structures of l-asparaginase from Bacillus liche...tial Residue for its Substrate Stereoselectivity.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7c8q', asym_id='B', title='Structures of l-asparaginase from Bacillus liche...tial Residue for its Substrate Stereoselectivity.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004067,0006528', uniprot = '', pdbid = '7c8q', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004067,0006528', uniprot='', pdbid='7c8q', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>