Structure of PDB 7bbv Chain B

Receptor sequence
>7bbvB (length=298) Species: 498257 (Verticillium dahliae VdLs.17) [Search protein sequence]
ASVTESCNIGYASTNGGTTGGKGGATTTVSTLAQFTKAAESSGKLNIVVK
GKISGGAKVRVQSDKTIIGQKGSELVGTGLYINKVKNVIVRNMKISKVKD
SNGDAIGIQASKNVWVDHCDLSSDLKSGKDYYDGLLDITHGSDWVTVSNT
FLHDHFKASLIGHTDSNAKEDKGKLHVTYANNYWYNVNSRNPSVRFGTVH
IYNNYYLEVGSSAVNTRMGAQVRVESTVFDKSTKNGIISVDSKEKGYATV
GDISWGSSTNTAPKGTLGSSNIPYSYNLYGKNNVKARVYGTAGQTLGF
3D structure
PDB7bbv The specificity of pectate lyase VdPelB from Verticilium dahliae is highlighted by structural, dynamical and biochemical characterizations.
ChainB
Resolution1.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D122 D151 D155 D104 D133 D137
BS02 MAN B T46 Q88 T28 Q70
BS03 MAN B S48 Q52 K68 S30 Q34 K50
BS04 MAN B T22 K40 T4 K22
BS05 MAN B T22 T44 T4 T26
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0030570 pectate lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0000272 polysaccharide catabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7bbv, PDBe:7bbv, PDBj:7bbv
PDBsum7bbv
PubMed36639075
UniProtG2X3Y1

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