Structure of PDB 6zy1 Chain B

Receptor sequence

>6zy1B (length=696) Species: 391937 (Nitratireductor pacificus pht-3B)

QISMRLYSNRDRPNHLGPLALERLARVDDVVAQPARQPEDGFAASEDSLL
GDVEEYARLFTRFLDGPVAPLGDAIPDDPARRAENLKASAYFLDASMVGI
CRLDPDDRAGDCDPSHTHALVFAVQFGREPEAGEAGAEWIRGTNAARTDM
RCAEIAAILSGYVRWMGFPARGHFSGDAQVDLARLAVRAGLARVVDGVLV
APFLRRGFRLGVVTTGYALAADRPLAPEGDLGETAPEVMLGIDGTRPGWE
DAEEEKRPLHMGRYPMETIRRVDEPTTLVVRQEIQRVAKRGDFFKRAEAG
DLGEKAKQEKKRFPMKHPLALGMQPLIQNMVPLQGTREKLAPTGKGGDLS
DPGRNAEAIKALGYYLGADFVGICRAEPWMYYASDEVEGKPIEAYHDYAV
VMLIDQGYETMEGASGDDWISASQSMRAYMRGAEIAGVMAAHCRRMGYSA
RSHSNAHSEVIHNPAILMAGLGEVSRIGDTLLNPFIGPRSKSIVFTTDLP
MSVDRPIDFGLQDFCNQCRKCARECPCNAISFGDKVMFNGYEIWKADVEK
CTKYRVTQMKGSACGRCMKMCPWNREDTVEGRRLAELSIKVPEARAAIIA
MDDALQNGKRNLIKRWWFDLEVIDGVAGAPRMGTNERDLSPDRGANQKLA
MYPPRLQPPPGTTLDAVLPVDRSGGLAEYAAAETPAAARARLKSSA

3D structure

• PDB: 6zy1 Catabolic Reductive Dehalogenase Substrate Complex Structures Underpin Rational Repurposing of Substrate Scope.
• Chain: B
• Resolution: 1.99 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	SF4	B	R473 L479 F511 C512 C515 C518 C568 P569 W570	R476 L482 F514 C515 C518 C521 C571 P572 W573
BS02	SF4	B	C522 P523 C548 C561 C564	C525 P526 C551 C564 C567
BS03	B12	B	D289 F290 F291 Y379 Y426 I458 H459 N460 P461 I474 D476 T477 L478 K488 S489 F535 Y538 K542 V545 T549 R552 C561 M565	D292 F293 F294 Y382 Y429 I461 H462 N463 P464 I477 D479 T480 L481 K491 S492 F538 Y541 K545 V548 T552 R555 C564 M568
BS04	QSB	B	F291 S422 Y426 K488 R552	F294 S425 Y429 K491 R555

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding
• GO:0051539 4 iron, 4 sulfur cluster binding

External links

• PDB: RCSB:6zy1, PDBe:6zy1, PDBj:6zy1
• PDBsum: 6zy1
• PubMed: 32887524
• UniProt: K2MB66