Structure of PDB 6yxk Chain B

Receptor sequence

>6yxkB (length=218) Species: 9606 (Homo sapiens) [Search protein sequence]

DIEMTQYPDSLAVFLGERATVNCKSSQSVLHWGNDKNYFAWYQQKRGQAP
KLLISSSSARESGVPDRFSGSGSGTDFNLTISSLQAEDVAVYFCQQYYEA
PYTFGQGTRLEIKTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK
VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE
VTHQGLSSPVTKSFNRGC

3D structure

PDB

6yxk Surface Ig variable domain glycosylation affects autoantigen binding and acts as threshold for human autoreactive B cell activation.

Chain

Resolution

2.0 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	H31 W32 G33 N34 Y38 Y98 Y102	H31 W32 G33 N34 Y38 Y98 Y102

External links

PDB	RCSB:6yxk, PDBe:6yxk, PDBj:6yxk
PDBsum	6yxk
PubMed	35138894

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