Structure of PDB 6yr4 Chain B

Receptor sequence
>6yr4B (length=305) Species: 1200984 (Streptomyces lividans 1326) [Search protein sequence]
PEPQMVLSPLTSAAIFLVVTIDSGGEDTVRDLLSDVASLERAVGFRAQPD
GRLSCVTGIGSEAWDRLFSGARPAGLHPFRELDGPVHRAVATPGDLLFHI
RASRLDLCFALATEIMGRLRGAVTPQDEVHGFKYFDERDMLGFVDGTENP
TGAAARRAVLVGAEDPAFAGGSYAVVQKYLHDIDAWEGLSVEAQERVIGR
RKMTDVELSDDVKPADSHVALTSVTGPDGSDLEILRDNMPFGSVGREEFG
TYFIGYARTPEVTETMLERMFLGTASAPHDRILDFSTAVTGSLFFTPAAD
FLEDL
3D structure
PDB6yr4 Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation.
ChainB
Resolution1.85 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEM B D146 V151 G153 T154 E155 Y186 R207 H225 T229 R243 F260 M273 L274 M277 I289 S293 D139 V144 G146 T147 E148 Y179 R200 H218 T222 R236 F253 M266 L267 M270 I282 S286
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 01:34:40 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6yr4', asym_id = 'B', title = 'Serial Femtosecond Zero Dose Crystallography Cap...ytic Role for an Arginine in Fe IV =O Formation. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6yr4', asym_id='B', title='Serial Femtosecond Zero Dose Crystallography Cap...ytic Role for an Arginine in Fe IV =O Formation. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004601,0020037', uniprot = '', pdbid = '6yr4', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004601,0020037', uniprot='', pdbid='6yr4', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>