Structure of PDB 6ymg Chain B

Receptor sequence

>6ymgB (length=309) Species: 680 (Vibrio campbellii) [Search protein sequence]

MNYWWVSQKQTFKQEFEGGYMWSPKENKNGTQSHYYNNMTLVQPGDVVFS
FANGLILSVGIARSHAYSYNKPTEFGVAGADWANDGWKIDLEYHLVENKI
RPKAHIDFIRPYLPQKYSPLQDNGNGNQAYLFSVPHELASKVVELIGSEA
EEVIFGFADTTEITTTADAIECQISNDASIDETEKHQLVKSRRGQGIFRS
RLEQVESRCRVTGVQLKNHLIASHIKPWAVSNNQERLDGHNGLLLAPHVD
HLFDKGFISFEDNGEMIVSEKLNLDVLKAWSISQGNYGYFSKQQQEYMCY
HRENVFKKL

3D structure

PDB

6ymg Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA.

Chain

Resolution

3.14 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	B	S7 Q8 K9 Q10 T11 E15 W22 N27 K28 N29 Y36 W82 G126 N127 Q128 A129 Y130	S7 Q8 K9 Q10 T11 E15 W22 N27 K28 N29 Y36 W82 G126 N127 Q128 A129 Y130
BS02	dna	B	Y35 K116 Y117 Q121 N127 Q128	Y35 K116 Y117 Q121 N127 Q128

External links

PDB	RCSB:6ymg, PDBe:6ymg, PDBj:6ymg
PDBsum	6ymg
PubMed	33450012

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