Structure of PDB 6yk9 Chain B

Receptor sequence
>6yk9B (length=341) Species: 694436 (Methanolacinia paynteri G-2000) [Search protein sequence]
TIKKVAILGAGCYRTHSATGITNFARACEVAEMVGKPEIAMTHSTIAMAA
ELKYLAGIDNIVISDPSFAGEFTVVKDFDYNEVIKAHKENPETIMPKIRE
KVNELAKTVPKPPKGAIHFVHPEDLGLKVTTDDREAVRDADLIITWLPKG
DMQKGIIEKFAGDIKQGAIITHACTIPTTLFYKIFEELGIADKVEVTSYH
PGAVPEMKGQVYIAEGYASEEAINTIYELGKKARGHAFKLPAELIGPVCD
MCAALTAITYAGLLVYRDAVMNILGAPAGFSQMMATESLEQITAYMKKVG
IKNLEENLDPGVFLGTADSMNFGPIAEILPTVLKSLEKRAK
3D structure
PDB6yk9 The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.
ChainB
Resolution1.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 5GP B L9 G12 S65 D66 P67 P113 P114 D134 W147 L148 P149 I157 L8 G11 S64 D65 P66 P112 P113 D133 W146 L147 P148 I156
BS02 GLY B H237 A238 H236 A237
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Nov 25 07:28:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6yk9', asym_id = 'B', title = 'The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6yk9', asym_id='B', title='The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0019386,0047068', uniprot = '', pdbid = '6yk9', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0019386,0047068', uniprot='', pdbid='6yk9', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>