Structure of PDB 6yba Chain B

Receptor sequence
>6ybaB (length=913) Species: 10524 (Human adenovirus 41) [Search protein sequence]
PSMMPQWSYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPT
HDVTTDRSQRLTLRFVPVDREDTAYSYKVRFTLAVGDNRVLDMASTYFDI
RGVLDRGPSFKPYSGTAYNSLAPKTAPNPCEWKDNNKIKVRGQAPFIGTN
INKDNGIQIGTDTTNQPIYADKTYQPEPQVGQTQWNSEVGAAQKVAGRVL
KDTTPMLPCYGSYAKPTNEKGGQASLITNLTSDVNLQFFALPSTPNEPKA
VLYAENVSIEAPDTHLVYKPDVAQGTISSADLLTQQAAPNRPNYIGFRDN
FIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLMLDALGDRSR
YFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLGGSAATDTYSGIKAN
GQTWTADDNYADRGAEIESGNIFAMEINLAANLWRSFLYSNVALYLPDSY
KITPDNITLPENKNTYAYMNGRVAVPSALDTYVNIGARWSPDPMDNVNPF
NHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNF
RKDVNMILQSSLGNDLRVDGASVRFDSINLYANFFPMAHNTASTLEAMLR
NDTNDQSFNDYLCAANMLYPIPSNATSVPISIPSRNWAAFRGWSFTRLKT
KETPSLGSGFDPYFTYSGSVPYLDGTFYLNHTFKKVSIMFDSSVSWPGND
RLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLIQMLSHYNIGYQGFYVPE
SYKDRMYSFFRNFQPMSRQVVNTTTYKEYQNVTLPFQHNNSGFVGYMGPT
MREGQAYPANYPYPLIGQTAVPSLTQKKFLCDRTMWRIPFSSNFMSMGAL
TDLGQNMLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRIHQPHRGV
IEAVYLRTPFSAG
3D structure
PDB6yba Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses.
ChainB
Resolution4.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 peptide B A32 R33 L41 F45 R46 N47 A29 R30 L38 F42 R43 N44
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6yba, PDBe:6yba, PDBj:6yba
PDBsum6yba
PubMed33627423
UniProtP11820|CAPSH_ADE41 Hexon protein (Gene Name=L3)

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