Structure of PDB 6xf9 Chain B

Receptor sequence
>6xf9B (length=424) Species: 435895 (Human herpesvirus 8 type M) [Search protein sequence]
FVPWQLGTITRHRDELQKLLAASLLPEHPEESLGNPIMTQIHQSLQPSSP
CRVCQLLFSLVRPMGFFEDYACLCFFCLYAPHCWTSTMAAAADLCEIMHL
HFPEEEATYGLFGPGRLMGIDLQLHFFVQKCFKTTAAEKILGISNLQFLK
SEFIRGMLTGTITFKTSWPCCQITDTTTAPASGIPELARATFCGASRPTK
PSLLPALIDIWSTSSELLDPFFSPPLQADTSQGPCLMHPTLGLRYKNGTA
SVCLLCECLAAHPEAPKALQTLQCEVMGHIENNVKLVDRIAFVLDNPFAM
PYVSDPLLRELIRGCTPQEIHKHLFCDPLCALNAKVVSEDVLFRLPREQE
YKKLRASAAAGQLLDANTLFDCEVVQTLVFLFKGLQNARVGKTTSLDIIR
ELTAQLKRHRLDLAHPSQTSHLYA
3D structure
PDB6xf9 A pentameric protein ring with novel architecture is required for herpesviral packaging.
ChainB
Resolution2.22 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C52 C55 H130 C136 C51 C54 H125 C131
BS02 ZN B C296 C299 H366 C373 C253 C256 H323 C330
BS03 ZN B C191 C192 C415 H452 C170 C171 C372 H409
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6xf9, PDBe:6xf9, PDBj:6xf9
PDBsum6xf9
PubMed33554858
UniProtP88958

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