Structure of PDB 6vpb Chain B

Receptor sequence
>6vpbB (length=324) Species: 272568 (Gluconacetobacter diazotrophicus PA1 5) [Search protein sequence]
MQIGIIGLGRMGGNIAVRLSRHGHDVVLFDRDAATVSKVSERIEGGRGVA
ATSLPDLVAKLTAKRKIVWVMLPCGEITENAVQELYGLLGKDDIVIDGGN
TYYKDDIRRAAQLADKGIHYVDVGTSGGVWGLERGYCMMYGGTKDSTDHI
DPILDALAPGKGDVAPTPDRGKPGLDPRAEKGYLHCGPAGSGHFVKMVHN
GIEYGMMQAFAEGFDIMKSKNSPKLPEDQRFDLNMADIAEVWRRGSVVSS
WLLDLTAEALAKNASLSEFTGEVADSGEGRWTLEAAIEEAVPAPVITASL
FTRFRSRTGNNYAEKVLSAMRFGF
3D structure
PDB6vpb The structure of a novel membrane-associated 6-phosphogluconate dehydrogenase from Gluconacetobacter diazotrophicus (Gd6PGD) reveals a subfamily of short-chain 6PGDs.
ChainB
Resolution1.87 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B D275 S276 G279 R280 D275 S276 G279 R280
Gene Ontology
Molecular Function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity
GO:0046872 metal ion binding
GO:0050661 NADP binding
Biological Process
GO:0006098 pentose-phosphate shunt
GO:0016054 organic acid catabolic process
GO:0019521 D-gluconate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6vpb, PDBe:6vpb, PDBj:6vpb
PDBsum6vpb
PubMed32621793
UniProtA9H324

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