Structure of PDB 6vm6 Chain B

Receptor sequence
>6vm6B (length=440) Species: 525244 (Acinetobacter sp. ATCC 27244) [Search protein sequence]
GAIARVGFGYQDAFVLRSLPLWLSQSAFSHIVSEALSDIEVCYFSSEKSL
HVMYEAKNHSLTATEFWDEIRRFKSLFDTHPKNFIWFNLVCPSYNTAISP
LISKIDRLRSVSVNGRSEYLDWCVGKKIDFSLAEFALDYVGFITFNSENS
ESIFLSEIQDTINIELLRSQVKQLKDQFKNLISRSSFGPIYRKDFENFIC
HALEEDRSQWLLDPIKINLSASSSQYQDLNLDISDFNGPDRAQKTSSDWN
SLIKKAVSIGDFIHNSGDRRTLLIDGKQRMSTACMLGYVFSATRNFLLEI
EHNGLIYRTDDHKQKEGQFFTKIEAVEPQGETEAIVAIGFPTAIGKDIDS
TINEVKSLPRLNLESSHAIDNMETLNLAVREAKSALVSFKSENKLSKLHL
FIKAPSVFAMVLGHRLNGICDIQLYDWVDGQYIPTAELNL
3D structure
PDB6vm6 CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
ChainB
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B N259 K299 Q300 R301 M302 H324 D369 A390 K425 P427 S428 W449 Y454 N237 K277 Q278 R279 M280 H302 D347 A368 K403 P405 S406 W427 Y432
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0004518 nuclease activity
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6vm6, PDBe:6vm6, PDBj:6vm6
PDBsum6vm6
PubMed32544385
UniProtC0VHC9|CAP4_ACIS2 CD-NTase-associated protein 4 (Gene Name=cap4)

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