Structure of PDB 6vg1 Chain B

Receptor sequence

>6vg1B (length=641) Species: 8355 (Xenopus laevis) [Search protein sequence]

KTVRYRTYEEDEPGTVIGTLAEDLHLEGEGSFRLMKQFNNSLIHVRESDG
QLSIGERIDRERICRQSPHCTLALDVVSVAKEQFKLIHVEVEVRDINDNS
PRFPGAEIPVEVSESAPVGTRIPLDIATDEDVGVNSIQSFQISENSHFSI
DVQTRADGVKYADLVLMKELDRESQSAYTLELLAMDGGSPSRSGTTMVNV
RVLDFNDNSPVFERSSVMVELMEDAPVGHLLLDLDALDPDEGANGEIVYG
FSPQVPQEVRQLFKIDAKSGRLTLEGQVDFETKQTYEFDAQAQDMALNPL
TATCKVIVRVIDVNDNAPVIGITPLTSISAGVAYITEAAARESFVALIST
TDRDSGQNGQVHCTLYGHEHFRLQQAYEDSYMIVTTSALDREKIAEYNLT
VVAEDLGSPPFKTVKQYTIRVSDENDNAPVFAKPVYEVSVLENNAPGAYI
TTVVARDPDFGHNGKVIYRLVETEVMGAPITTYVSLDPATGAVYALRTFN
HEILQQLDLRIQASDGGSPQLTSSAIIKVKIVDQNDNAPVIVQPALSNGS
AEVVVPSRAPHGFLVTHIKAKDADEGVNAELTYSIADEGRNVFTINKATG
EVFLVADVSEAIGQVFRATVSVSDSGRPPLSSTATITFLVT

3D structure

PDB

6vg1 Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.

Chain

Resolution

2.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CA	B	E9 E61 D95 I96 D98 D131	E9 E61 D95 I96 D98 D131
BS02	CA	B	E9 E10 D59 E61 D98	E9 E10 D59 E61 D98
BS03	CA	B	N97 N99 D129 D131 N135 D186	N97 N99 D129 D131 N135 D186
BS04	CA	B	E114 D171 E173 D207	E114 D171 E173 D207
BS05	CA	B	E114 E173 D204 F205 D207 D240	E114 E173 D204 F205 D207 D240
BS06	CA	B	N206 N208 D238 D240 N244 D294	N206 N208 D238 D240 N244 D294
BS07	CA	B	E223 D279 E281 D315	E223 D279 E281 D315
BS08	CA	B	E223 E281 D312 V313 D315 D354	E223 E281 D312 V313 D315 D354
BS09	CA	B	N314 N316 D352 D354 N358 D405	N314 N316 D352 D354 N358 D405
BS10	CA	B	E337 D390 E392 D426	E337 D390 E392 D426
BS11	CA	B	E337 E392 D423 E424 D426 D459	E337 E392 D423 E424 D426 D459
BS12	CA	B	N425 N427 D457 D459 N463 D515	N425 N427 D457 D459 N463 D515
BS13	CA	B	E442 N443 N500 E502 D536	E442 N443 N500 E502 D536
BS14	CA	B	E442 E502 D533 Q534 D536 D574	E442 E502 D533 Q534 D536 D574
BS15	CA	B	N535 N537 D572 D574 N578 D624	N535 N537 D572 D574 N578 D624
BS16	MAN	B	M185 S193	M185 S193
BS17	MAN	B	E181 L183 T195	E181 L183 T195

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6vg1, PDBe:6vg1, PDBj:6vg1
PDBsum	6vg1
PubMed	32101743
UniProt	Q6GLU2

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