Structure of PDB 6sml Chain B

Receptor sequence
>6smlB (length=911) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence]
QVVVLGYGTGQKLSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVM
TTSGDPTAVASVEIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFES
MSVLKDASATSIYGARAANGVVFIQTKKGKMSERGRITFNASYGISQILN
TKPLDNMMTGDELLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSL
KDEYGKTLFPVDFNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIG
YFDQEGMAREPANFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYF
GKYYMGSGTFGVLTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKM
RPFSSESHQANVNGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYD
STPLGERRERAYRDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDV
IGASSKGFESDKLMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDK
WMYIDFSVRNDQSSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRL
KMSYGTTGNSEIGNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQ
FNFGLAAGAFNNRLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSM
KNTGVDLSLKGTIYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTG
TIWEIGYPNSFYMAEYAGIDKKTGKQLWYVPGQVDKVTTSQYSADLETRI
DKSVTPPITGGFSLGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLM
QLNKDKMLLNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTY
VLPNSLFAGQNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNS
KQYVAGIQLSF
3D structure
PDB6sml Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
ChainB
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B Y401 Y405 Y406 M407 E446 N894 Y897 F898 F936 K1000 Y299 Y303 Y304 M305 E344 N788 Y791 F792 F830 K894
BS02 5PL B N523 H543 Y545 N421 H441 Y443
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links
PDB RCSB:6sml, PDBe:6sml, PDBj:6sml
PDBsum6sml
PubMed32393857
UniProtQ7MXJ7

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