Structure of PDB 6sln Chain B

Receptor sequence
>6slnB (length=902) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence]
LSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVMTTSGDPTAVASV
EIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFESMSVLKDASATSI
YGARAANGVVFIQTKKGKMSERGRITFNASYGISQILNTKPLDNMMTGDE
LLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSLKDEYGKTLFPVD
FNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIGYFDQEGMAREPA
NFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYFGKYYMGSGTFGV
LTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKMRPFSSESHQANV
NGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYDSTPLGERRERAY
RDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDVIGASSKGFESDK
LMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDKWMYIDFSVRNDQ
SSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRLKMSYGTTGNSEI
GNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQFNFGLAAGAFNN
RLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSMKNTGVDLSLKGT
IYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTGTIWEIGYPNSFY
MAEYAGIDKKTGKQLWYVPGQVDADGNKVTTSQYSADLETRIDKSVTPPI
TGGFSLGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLMQLNKDKML
LNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTYVLPNSLFA
QNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNSKQYVAGIQL
SF
3D structure
PDB6sln Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
ChainB
Resolution2.61 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B Y405 N800 T801 N894 F898 F936 N997 K1000 Y291 N686 T687 N780 F784 F822 N882 K885
BS02 C8E B A392 A462 A278 A348
BS03 C8E B R372 S390 V464 R258 S276 V350
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links
PDB RCSB:6sln, PDBe:6sln, PDBj:6sln
PDBsum6sln
PubMed32393857
UniProtQ7MXJ7

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