Structure of PDB 6slj Chain B

Receptor sequence
>6sljB (length=900) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence]
LSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVMTTSGDPTAVASV
EIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFESMSVLKDASATSI
YGARAANGVVFIQTKKGKMSERGRITFNASYGISQILNTKPLDNMMTGDE
LLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSLKDEYGKTLFPVD
FNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIGYFDQEGMAREPA
NFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYFGKYYMGSGTFGV
LTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKMRPFSSESHQANV
NGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYDSTPLGERRERAY
RDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDVIGASSKGFESDK
LMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDKWMYIDFSVRNDQ
SSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRLKMSYGTTGNSEI
GNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQFNFGLAAGAFNN
RLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSMKNTGVDLSLKGT
IYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTGTIWEIGYPNSFY
MAEYAGIDKKTGKQLWYVPGQVDAKVTTSQYSADLETRIDKSVTPPITGG
FSLGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLMQLNKDKMLLNA
WTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTYVLPNSLFAGQN
VIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNSKQYVAGIQLSF
3D structure
PDB6slj Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
ChainB
Resolution3.04 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B Y405 Y406 M407 N800 T801 N894 F898 F936 N997 V998 K1000 Y291 Y292 M293 N686 T687 N777 F781 F819 N880 V881 K883
BS02 C8E B G371 V464 G257 V350
BS03 C8E B A392 I393 A462 V464 I486 A278 I279 A348 V350 I372
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links
PDB RCSB:6slj, PDBe:6slj, PDBj:6slj
PDBsum6slj
PubMed32393857
UniProtQ7MXJ7

[Back to BioLiP]