Structure of PDB 6rka Chain B

Receptor sequence
>6rkaB (length=360) Species: 519849 (Ureaplasma urealyticum serovar 7 str. ATCC 27819) [Search protein sequence]
KKIITSESVGAGHPDKICDQISDAILDECLSQDQNSRVACEVLACNRLIV
IAGEITTHAYVDVVKTAWEIIKPLGYDENDFTIISNVNKQSVNLIGAGDQ
GIVFGYACDETPQYMPLTSVLAHELLKEIERQRRSKEFIKIQADMKSQVS
IDYSNSTPLIETMLVSIQHDEDYDVEYFNKKVSAIMEQIAKKYNLNTNFK
KIINSSGRFVIGGPIGDTGLTGRKIIVDTYGGVGHHGGGAFSGKDPTKVD
RSASYFARWIAKNVVAAKLAKQCEIQLAFAIGQPQPVAMYVNTFNTNLID
ETKIFEAIKKSFNFDIKTFINDLNLWTTKYLPVATYGHFGRDDLDLSWEK
LNKVEDLIKN
3D structure
PDB6rka The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase.
ChainB
Resolution2.5 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP B D113 K258 D99 K244
BS02 SAM B H16 P17 D158 K160 S220 F223 D231 H13 P14 D144 K146 S206 F209 D217
BS03 ATP B H16 P17 D18 D158 K160 S220 R222 F223 D231 R237 K238 H13 P14 D15 D144 K146 S206 R208 F209 D217 R223 K224
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Dec 18 21:58:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6rka', asym_id = 'B', title = 'The interdimeric interface controls function and...sma urealiticum methionine S-adenosyltransferase.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6rka', asym_id='B', title='The interdimeric interface controls function and...sma urealiticum methionine S-adenosyltransferase.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004478,0005524,0006556', uniprot = '', pdbid = '6rka', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004478,0005524,0006556', uniprot='', pdbid='6rka', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>