Structure of PDB 6rid Chain B

Receptor sequence
>6ridB (length=1120) Species: 502057 (Vaccinia virus GLV-1h68) [Search protein sequence]
EMDQRLGYKFLVPDPKAGVFYRPLHFQYVSYSNFILHRLHEILTVKRPLL
SFKNNTERIMIEISNVKVTPPDYSPIIASIKGKSYDALATFTVNIFKEVM
TKEGISITKISSYEGHLIKIPLLIGYGNKNPLDTAKYLVPNVIGGVFINK
QSVEKVGINLVEKITTWPKFRVVKPNSFTFSFSSVSPPNVLPTRYRHYKI
SLDISQLEALNISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEV
VYLVNAIIDSAKRITESITDFNIDTYINDLVEAEHIKQKSQLTINEFKYE
MLHNFLPHMNYTPDQLKGFYMISLLRKFLYCIFHTSRYPDRDSMVCHRIL
TYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVLTTPGLNHA
FSSLLSGKSDGSYRTHPHYSWMQNISIPRSVGFYPSVRKYHPSQYLYFCS
SDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDDIS
YFETGFPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVR
DHMNEIRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKE
FPHVIEMVDIEQFTFSNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYV
ASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLMYPERPI
VISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDI
VTAKKHQVEIPLENFNNAYSKLESNGLVRLNAFLESGDAMARNISSSFDV
SEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILGDKFTTRTSQKGT
VAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKP
YNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCE
KILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQAN
EGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGD
IAAQIKGINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDF
ERRPPSFYKPLDKVDLKPSF
3D structure
PDB6rid Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes.
ChainB
Resolution2.9 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B N711 K777 R1045 K1046 K1052 N689 K755 R1003 K1004 K1010
BS02 rna B Y432 R478 Q696 K890 H1020 Y419 R456 Q674 K848 H978
BS03 ZN B C1087 C1103 C1106 C1045 C1061 C1064
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 20:54:32 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6rid', asym_id = 'B', title = 'Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6rid', asym_id='B', title='Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003677,0003899,0006351,0032549', uniprot = '', pdbid = '6rid', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0003899,0006351,0032549', uniprot='', pdbid='6rid', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>